What model AU is it? Do you plan on running the AU electronics or were you going to swap the intake to use a carb instead?
If you are going to run the AU electronics, you will need to brake down a lot of the AU's body wiring as you will need to incorporate the security system to get it to operate.
AU1, you will only need the ECU and BEM as the security system is the old Smartlock system.
AU1.5 and AU2/3, you will need the ECU, BEM and chip key as all three incorporate into the Smartshield system.
If you do run the BEM, you will have the added feature of being able to adapt the AU body electronics to the Mustang. I did this to an XF years ago. It did take a lot of time and if you plan on paying someone to do it, it could end up being very costly.