The smartlock and smartshield can be disabled with a J3 chip, which inserts into the ecu. No need to install bypasses or use the BEM anymore.
The AU's with the 4 speed autos have the transmission ecu integrated into the main ecu. So if you are running the efi also, then all you need is the auto eecv ecu from the AU and you are set.
If you aren't running the efi, and want to control the auto box, then you need a stand alone tranny ecu from the earlier models(I have a spare from an NC actually I believe). EF/EL V8's were the last to run a separate transmission ecu. Earlier models run them however not sure if the 6's and 8's both ran them. The ef/el v8's require a tach input, not sure about older models. They need a TPS input, so you just need to mount a TPS to the carb which is no big deal. They also require a VSS input, and you would be able to work something out as the tranny has a vss output(normally goes to the cluster then to the ecu then to the tcm, as the cluster provides power to the sender and also to boost the signal output). The EF/EL also has an engine input data input, which runs the tranny differently for AC and overheating. You'd 'assume' it would run fine without that input, but you know what they say about 'assuming'. Not sure if the older model tcm's had this.
I have a bunch of service manuals, diagrams and pinouts etc for the btr and the ef/el models if anyone wants them. I'm currently having an EF EECV with the standalone ecu into a 65, so I did as much research as I could to make things go as smooth as possible.